Orthogonal Discriminant Projection (ODP) is a linear dimension reduction method with label information, i.e., supervised. The method maximizes weighted difference between local and non-local scatter while local information is also preserved by constructing a neighborhood graph.
an \((n\times p)\) matrix or data frame whose rows are observations and columns represent independent variables.
a length-\(n\) vector of data class labels.
an integer-valued target dimension.
an additional option for preprocessing the data.
Default is "center". See also aux.preprocess
for more details.
a vector of neighborhood graph construction. Following types are supported;
c("knn",k)
, c("enn",radius)
, and c("proportion",ratio)
.
Default is c("proportion",0.1)
, connecting about 1/10 of nearest data points
among all data points. See also aux.graphnbd
for more details.
one of "intersect"
, "union"
or "asymmetric"
is supported. Default is "union"
. See also aux.graphnbd
for more details.
balancing parameter of non-local and local scatter in \([0,1]\).
scaling control parameter for distant pairs of data in \((0,\infty)\).
a named list containing
an \((n\times ndim)\) matrix whose rows are embedded observations.
a \((p\times ndim)\) whose columns are basis for projection.
a list containing information for out-of-sample prediction.
Li B, Wang C, Huang D (2009). “Supervised Feature Extraction Based on Orthogonal Discriminant Projection.” Neurocomputing, 73(1-3), 191--196.
## use iris data
data(iris)
set.seed(100)
subid = sample(1:150, 50)
X = as.matrix(iris[subid,1:4])
label = as.factor(iris[subid,5])
## try different beta (scaling control) parameter
out1 = do.odp(X, label, beta=1)
out2 = do.odp(X, label, beta=10)
out3 = do.odp(X, label, beta=100)
## visualize
opar <- par(no.readonly=TRUE)
par(mfrow=c(1,3))
plot(out1$Y, col=label, pch=19, main="ODP::beta=1")
plot(out2$Y, col=label, pch=19, main="ODP::beta=10")
plot(out3$Y, col=label, pch=19, main="ODP::beta=100")
par(opar)